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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72749.1ATPase component NikO of energizing module of nickel ECF transporter. (253 aa)    
Predicted Functional Partners:
cbiQ
Transmembrane component NikQ of energizing module of nickel ECF transporter.
 
 0.999
SFV72752.1
Substrate-specific component NikM of nickel ECF transporter.
 
 0.997
SFV72753.1
Additional periplasmic component NikK of nickel ECF transporter.
 
  
 0.981
SFV72981.1
Additional periplasmic component NikK of nickel ECF transporter.
 
  
 0.956
SFV72751.1
Additional component NikL of nickel ECF transporter.
 
     0.948
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.565
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.533
cbiE
Precorrin-6y C5,15-methyltransferase (Decarboxylating), CbiE subunit; Cobalt-precorrin-6y C5-methyltransferase / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating].
  
  
 0.496
cobA
Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.
     
 0.462
SFV74204.1
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
 
 
0.461
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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