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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72784.1Capsular polysaccharide biosynthesis/export periplasmic protein WcbC. (388 aa)    
Predicted Functional Partners:
SFV72785.1
Capsular polysaccharide ABC transporter, permease protein KpsM.
 
  
 0.978
SFV72787.1
Capsular polysaccharide export system inner membrane protein KpsE.
 
  
 0.963
SFV72782.1
Capsular polysaccharide biosynthesis fatty acid synthase WcbR.
 
   
 0.925
SFV72786.1
Capsular polysaccharide ABC transporter, ATP-binding protein KpsT.
 
  
 0.863
SFV72783.1
8-amino-7-oxononanoate synthase.
 
     0.854
SFV72800.1
Capsular polysaccharide biosynthesis protein WcbQ.
 
   
 0.731
SFV72583.1
Cytosolic Fe-S cluster assembling factor NBP35; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.687
SFV72965.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.574
SFV72790.1
UDP-glucose dehydrogenase.
 
  
 0.541
SFV72781.1
Integrase.
 
     0.521
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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