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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV72880.1Phosphoglycolate phosphatase. (220 aa)    
Predicted Functional Partners:
SFV73078.1
HAD-superfamily hydrolase, subfamily IA, variant 1.
  
  
  0.972
SFV72553.1
Phosphoglycolate phosphatase.
  
  
 
0.927
SFV74105.1
Glycolate dehydrogenase, subunit GlcD.
    
 0.906
pdxB
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.901
SFV74106.1
Predicted glycolate dehydrogenase, 2-subunit type, iron-sulfur subunit GlcF.
     
  0.900
SFV72881.1
Ferredoxin 3 fused to uncharacterized domain.
       0.776
SFV73201.1
Fumarate hydratase class I, aerobic; L(+)-tartrate dehydratase beta subunit.
 
      0.714
SFV72883.1
Iron-sulfur cluster regulator IscR.
 
     0.640
SFV72878.1
Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
     0.630
nifU
Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
       0.574
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.