SFV72929.1 protein (Desulfovibrio piger) - STRING interaction network

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Score

SFV72929.1

COG1399 protein, clustered with ribosomal protein L32p. (185 aa)

Predicted Functional Partners:

rpmF

0.935

rpsC

0.885

rplK

0.832

rplC

0.792

rpmB

0.776

rpsF

0.774

rpsB

0.774

rpsP

0.773

infC

0.772

rplA

0.770

Your Current Organism:

Desulfovibrio piger

NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFV72929.1	infC	DESPIGER_1066	DESPIGER_2352	COG1399 protein, clustered with ribosomal protein L32p.	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.772
SFV72929.1	rplA	DESPIGER_1066	DESPIGER_1097	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L1p (L10Ae); Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.770
SFV72929.1	rplC	DESPIGER_1066	DESPIGER_2542	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.792
SFV72929.1	rplK	DESPIGER_1066	DESPIGER_1096	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L11p (L12e); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.832
SFV72929.1	rpmB	DESPIGER_1066	DESPIGER_0297	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.776
SFV72929.1	rpmF	DESPIGER_1066	DESPIGER_1067	COG1399 protein, clustered with ribosomal protein L32p.	LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-dependent; Belongs to the bacterial ribosomal protein bL32 family.	0.935
SFV72929.1	rpsB	DESPIGER_1066	DESPIGER_2223	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family.	0.774
SFV72929.1	rpsC	DESPIGER_1066	DESPIGER_2548	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.885
SFV72929.1	rpsF	DESPIGER_1066	DESPIGER_1524	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.774
SFV72929.1	rpsP	DESPIGER_1066	DESPIGER_2611	COG1399 protein, clustered with ribosomal protein L32p.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.773
infC	SFV72929.1	DESPIGER_2352	DESPIGER_1066	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	COG1399 protein, clustered with ribosomal protein L32p.	0.772
infC	rplA	DESPIGER_2352	DESPIGER_1097	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L1p (L10Ae); Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.832
infC	rplC	DESPIGER_2352	DESPIGER_2542	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L3p (L3e); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.893
infC	rplK	DESPIGER_2352	DESPIGER_1096	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L11p (L12e); Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.893
infC	rpmB	DESPIGER_2352	DESPIGER_0297	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.	0.643
infC	rpmF	DESPIGER_2352	DESPIGER_1067	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L32p @ LSU ribosomal protein L32p, zinc-dependent; Belongs to the bacterial ribosomal protein bL32 family.	0.829
infC	rpsB	DESPIGER_2352	DESPIGER_2223	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S2p (SAe); Belongs to the universal ribosomal protein uS2 family.	0.948
infC	rpsC	DESPIGER_2352	DESPIGER_2548	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S3p (S3e); Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.941
infC	rpsF	DESPIGER_2352	DESPIGER_1524	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S6p; Binds together with S18 to 16S ribosomal RNA.	0.930
infC	rpsP	DESPIGER_2352	DESPIGER_2611	Translation initiation factor 3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.911