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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73071.1Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily. (320 aa)    
Predicted Functional Partners:
SFV72502.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
 
 0.998
SFV72501.1
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1).
 0.987
SFV74318.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
  
 0.984
SFV71923.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1).
 
 
 0.954
SFV72264.1
Nickel transport system permease protein NikC (TC 3.A.1.5.3).
  
 0.951
SFV72265.1
Nickel transport system permease protein NikB (TC 3.A.1.5.3).
 
 0.874
SFV74317.1
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2).
 
 0.874
SFV74204.1
Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1); Belongs to the ABC transporter superfamily.
 
  
0.711
SFV72008.1
ABC transporter, ATP-binding protein.
 
     
0.682
SFV73070.1
VacJ family lipoprotein.
       0.486
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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