SFV73103.1 protein (Desulfovibrio piger) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFV73103.1

COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like. (490 aa)

Predicted Functional Partners:

SFV73105.1

0.563

mqnA

0.519

nifU

0.468

SFV73599.1

0.466

cobA

0.441

mqnD

0.416

Your Current Organism:

Desulfovibrio piger

NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFV73103.1	SFV73105.1	DESPIGER_1252	DESPIGER_1254	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Hypothetical protein.	0.563
SFV73103.1	SFV73599.1	DESPIGER_1252	DESPIGER_1768	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Hypothetical protein.	0.466
SFV73103.1	cobA	DESPIGER_1252	DESPIGER_2025	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.	0.441
SFV73103.1	mqnA	DESPIGER_1252	DESPIGER_2579	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Menaquinone via futalosine step 1; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).	0.519
SFV73103.1	mqnD	DESPIGER_1252	DESPIGER_2584	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Menaquinone via futalosine step 4; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.	0.416
SFV73103.1	nifU	DESPIGER_1252	DESPIGER_1021	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.468
SFV73105.1	SFV73103.1	DESPIGER_1254	DESPIGER_1252	Hypothetical protein.	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.563
SFV73599.1	SFV73103.1	DESPIGER_1768	DESPIGER_1252	Hypothetical protein.	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.466
cobA	SFV73103.1	DESPIGER_2025	DESPIGER_1252	Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.441
cobA	nifU	DESPIGER_2025	DESPIGER_1021	Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.	Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	0.885
mqnA	SFV73103.1	DESPIGER_2579	DESPIGER_1252	Menaquinone via futalosine step 1; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.519
mqnA	mqnD	DESPIGER_2579	DESPIGER_2584	Menaquinone via futalosine step 1; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).	Menaquinone via futalosine step 4; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.	0.847
mqnD	SFV73103.1	DESPIGER_2584	DESPIGER_1252	Menaquinone via futalosine step 4; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.416
mqnD	mqnA	DESPIGER_2584	DESPIGER_2579	Menaquinone via futalosine step 4; Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2); Belongs to the MqnA/MqnD family. MqnD subfamily.	Menaquinone via futalosine step 1; Catalyzes the dehydration of chorismate into 3-[(1- carboxyvinyl)oxy]benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2).	0.847
nifU	SFV73103.1	DESPIGER_1021	DESPIGER_1252	Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like.	0.468
nifU	cobA	DESPIGER_1021	DESPIGER_2025	Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.	Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.	0.885