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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73217.1ABC transport system, permease component YbhS. (379 aa)    
Predicted Functional Partners:
SFV73218.1
ABC transporter multidrug efflux pump, fused ATP-binding domains.
  
 0.993
SFV73216.1
ABC transport system, permease component YbhR.
 
  
 
0.890
SFV73219.1
Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG.
 
  
 0.889
SFV72021.1
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1).
 
      0.851
metN
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
      0.576
SFV73004.1
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1).
 
      0.552
SFV72461.1
TPR domain protein.
  
  
 0.546
SFV72782.1
Capsular polysaccharide biosynthesis fatty acid synthase WcbR.
  
  
 0.478
SFV73347.1
Ferredoxin.
  
  
 0.468
SFV73252.1
Amino acid ABC transporter, ATP-binding protein.
 
      0.465
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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