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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73247.1Protein of unknown function DUF88. (230 aa)    
Predicted Functional Partners:
SFV72629.1
Structural protein P5.
 
     0.567
SFV73248.1
Amino acid ABC transporter, periplasmic amino acid-binding protein.
  
   0.558
SFV73052.1
Trehalose synthase.
  
     0.549
SFV73246.1
GCN5-related N-acetyltransferase.
     
 0.502
SFV73053.1
Translation initiation factor 2.
  
     0.473
SFV73294.1
Hypothetical protein.
  
     0.425
SFV73086.1
Na+/H+ antiporter family protein.
  
     0.423
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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