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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73251.1ABC-type amino acid transport system, permease component. (266 aa)    
Predicted Functional Partners:
SFV73249.1
Amino acid ABC transporter, periplasmic amino acid-binding protein.
 
 0.990
SFV73252.1
Amino acid ABC transporter, ATP-binding protein.
 
 0.987
SFV73248.1
Amino acid ABC transporter, periplasmic amino acid-binding protein.
 
 0.986
SFV74332.1
Extracellular solute-binding protein, family 3.
 
 0.981
SFV74330.1
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1).
 
 0.947
SFV73394.1
Arginine ABC transporter, periplasmic arginine-binding protein ArtI.
 
 
 0.670
SFV74331.1
Polar amino acid ABC transporter, inner membrane subunit.
  
  
 
0.529
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
 
 0.526
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.524
SFV74329.1
ABC-type amino acid transport system, permease component.
  
  
 
0.496
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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