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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73295.1Membrane-bound lytic murein transglycosylase B precursor. (366 aa)    
Predicted Functional Partners:
SFV73296.1
DNA-binding protein, putative.
 
     0.811
hflC
HflC protein; HflC and HflK could regulate a protease.
       0.777
hflK
HflK protein; HflC and HflK could encode or regulate a protease.
       0.777
SFV74348.1
FIG138315: Putative alpha helix protein.
  
     0.501
SFV74249.1
Transporter, putative.
  
  
 0.497
SFV73044.1
NLP/P60 family protein.
 
   
 0.471
SFV72447.1
tRNA:Cm32/Um32 methyltransferase.
  
     0.435
SFV73300.1
Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA.
       0.430
rlpA-2
Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
     
 0.428
SFV72252.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
   
 0.424
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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