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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73315.1Nitrogen regulation protein NtrX. (459 aa)    
Predicted Functional Partners:
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
 
 0.778
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.764
SFV73316.1
Signal transduction histidine kinase.
 
   0.730
SFV73489.1
Sensor protein of zinc sigma-54-dependent two-component system.
 
 
 0.664
SFV73414.1
Flagellar synthesis regulator FleN.
  
 
 0.470
SFV72390.1
Flagellar motor switch protein FliG.
  
  
 0.464
SFV74162.1
Hypothetical protein.
  
  
 0.459
pgi
Glucose-6-phosphate isomerase.
  
  
 0.418
SFV72631.1
Hypothetical protein.
   
 
 0.411
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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