Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
SFV73426.1Pyruvate formate-lyase activating enzyme. (313 aa)    
Predicted Functional Partners:
SFV73427.1
Pyruvate formate-lyase.
 
 
 0.995
nifU
Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.801
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.730
SFV73091.1
Alcohol dehydrogenase.
 
  
 0.675
SFV72698.1
NAD-dependent formate dehydrogenase alpha subunit @ selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.667
SFV73425.1
Sigma-54 dependent transcriptional regulator.
       0.594
SFV73229.1
Periplasmic [Fe] hydrogenase.
   
 
 0.592
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.591
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
 
 0.482
SFV72043.1
TPR-repeat-containing proteins.
 
    0.457
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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