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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73426.1Pyruvate formate-lyase activating enzyme. (313 aa)    
Predicted Functional Partners:
SFV73427.1
Pyruvate formate-lyase.
 
  
 0.972
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
  
 0.829
nifU
Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.827
SFV72698.1
NAD-dependent formate dehydrogenase alpha subunit @ selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.766
SFV73091.1
Alcohol dehydrogenase.
 
  
 0.669
SFV73229.1
Periplasmic [Fe] hydrogenase.
   
 
 0.623
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.587
SFV73425.1
Sigma-54 dependent transcriptional regulator.
  
    0.576
SFV72847.1
Multi-sensor hybrid histidine kinase.
  
 
 0.524
SFV72241.1
Glutamate synthase [NADPH] large chain.
  
  
 0.507
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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