STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73556.1Acetyltransferase, GNAT family; Putative acetyltransferase / Putative acetyltransferase, GNAT family / DNA-3-methyladenine glycosylase / GMP synthase [glutamine-hydrolyzing]. (213 aa)    
Predicted Functional Partners:
SFV72817.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.578
SFV73557.1
Hypothetical protein.
       0.567
SFV72782.1
Capsular polysaccharide biosynthesis fatty acid synthase WcbR.
  
  
 0.563
SFV73495.1
tRNA proofreading protein STM4549.
 
 
    0.543
SFV73908.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.499
SFV73976.1
FIG00604257: hypothetical protein.
  
  
 0.499
SFV72847.1
Multi-sensor hybrid histidine kinase.
   
 
 0.493
SFV74193.1
2-acylglycerophosphoethanolamine acyltransferase.
  
  
 0.461
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.451
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.445
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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