STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73595.1ABC transporter involved in cytochrome c biogenesis, CcmB subunit. (225 aa)    
Predicted Functional Partners:
SFV73594.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
 
 0.999
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.
 
  
  0.968
SFV73597.1
Cytochrome c heme lyase subunit CcmF.
 
  
 0.955
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.949
SFV72416.1
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase.
  
 
 0.871
SFV73592.1
FIG00602578: hypothetical protein.
 
   
 0.791
SFV73781.1
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
 
     0.730
SFV72943.1
FIG00602270: hypothetical protein.
  
     0.720
SFV72136.1
FIG00603395: hypothetical protein.
  
     0.714
SFV72579.1
FIG00605441: hypothetical protein.
  
     0.705
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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