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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73628.1Re face-specific citrate synthase / extracellular cache domain. (608 aa)    
Predicted Functional Partners:
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
  
 
 0.945
SFV73671.1
Aconitase family protein YbhJ.
  
 0.922
SFV72534.1
Pyruvate carboxylase.
  
 
 0.917
SFV72154.1
2-oxoglutarate oxidoreductase, beta subunit.
   
 
 0.905
SFV72155.1
2-oxoglutarate oxidoreductase, alpha subunit.
   
 
 0.905
SFV73030.1
2-oxoglutarate oxidoreductase, alpha subunit.
   
 
 0.905
SFV73031.1
2-oxoglutarate oxidoreductase, beta subunit.
   
 
 0.905
SFV73885.1
2-oxoglutarate oxidoreductase, beta subunit.
   
 
 0.905
SFV73886.1
2-oxoglutarate oxidoreductase, alpha subunit.
   
 
 0.905
SFV73999.1
Putative acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Acetyl-coenzyme A carboxyl transferase alpha chain / Acetyl-coenzyme A carboxyl transferase beta chain.
 
  
  0.834
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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