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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73629.1Exoribonuclease II. (709 aa)    
Predicted Functional Partners:
coaE
Ribosomal large subunit pseudouridine synthase D; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
 
 0.747
SFV74131.1
Werner syndrome helicase homolog.
   
 
 0.735
SFV72943.1
FIG00602270: hypothetical protein.
 
     0.707
SFV74077.1
FIG00607242: hypothetical protein.
  
     0.673
SFV72578.1
Light-harvesting LHII, alpha subunit B / Histone protein.
 
  0.672
SFV73781.1
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.660
SFV73496.1
Chorismate mutase I / EPT-like Enolpyruvate transferase (EPSP synthase-like).
 
     0.656
SFV72579.1
FIG00605441: hypothetical protein.
 
     0.651
SFV72476.1
FIG00602432: hypothetical protein.
  
     0.650
SFV73566.1
Hypothetical protein.
  
     0.638
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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