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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73634.1LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM. (445 aa)    
Predicted Functional Partners:
SFV74159.1
Hypothetical protein.
  
     0.695
SFV73183.1
FIG00602345: hypothetical protein.
  
     0.683
rpsA
SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.671
SFV73180.1
FIG00605539: hypothetical protein.
  
     0.643
SFV73174.1
FIG00603465: hypothetical protein.
  
     0.638
SFV73331.1
Hypothetical protein.
  
     0.542
SFV72578.1
Light-harvesting LHII, alpha subunit B / Histone protein.
  
     0.541
SFV73605.1
Putative Fe-S oxidoreductase.
  
     0.541
SFV72629.1
Structural protein P5.
  
     0.522
SFV72194.1
FIG003033: Helicase domain protein.
  
     0.501
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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