STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaK-2Phenylacetate-coenzyme A ligase. (426 aa)    
Predicted Functional Partners:
SFV72740.1
Acetamidase/formamidase.
     
  0.900
SFV72983.1
Phenylacetic acid degradation protein PaaD, thioesterase.
 
  
 0.649
SFV72250.1
Amino acid-binding ACT.
 
   0.624
iorA
Indolepyruvate oxidoreductase subunit IorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.451
sfsA
Sugar/maltose fermentation stimulation protein homolog; Belongs to the SfsA family.
       0.416
SFV74328.1
Indolepyruvate oxidoreductase subunit IorB.
 
    0.409
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.