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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73768.1FIG00602547: hypothetical protein. (89 aa)    
Predicted Functional Partners:
SFV73769.1
FIG00603411: hypothetical protein.
       0.778
rlpA-2
Rare lipoprotein A precursor; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
       0.777
SFV74042.1
FIG00605754: hypothetical protein.
  
     0.766
SFV72541.1
FIG00603770: hypothetical protein.
  
     0.749
SFV72748.1
TRASH.
  
     0.743
SFV73076.1
FIG00602384: hypothetical protein.
  
     0.740
SFV73380.1
Menaquinone via futalosine step 2.
  
     0.723
SFV73781.1
Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives.
  
     0.710
SFV72485.1
Adenylate cyclase.
  
     0.708
SFV73984.1
tRNA nucleotidyltransferase.
  
     0.698
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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