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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV73896.1Serine phosphatase RsbU, regulator of sigma subunit. (184 aa)    
Predicted Functional Partners:
SFV72847.1
Multi-sensor hybrid histidine kinase.
   
 
 0.721
gap-2
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
    0.540
SFV73706.1
Multi-sensor hybrid histidine kinase.
 
 
 
 0.519
SFV72985.1
Hypothetical protein.
   
 
 0.464
SFV74354.1
Sensor histidine kinase/response regulator.
   
 
 0.455
SFV72565.1
Hypothetical protein.
   
    0.436
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
    0.426
mrdA
Penicillin-binding protein 2 (PBP-2).
       0.400
SFV73899.1
Rod shape-determining protein MreD.
       0.400
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.400
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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