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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrdAPenicillin-binding protein 2 (PBP-2). (669 aa)    
Predicted Functional Partners:
mrdB
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.990
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.976
SFV73901.1
Rod shape-determining protein MreB.
 
 
 0.969
SFV72776.1
Cell division protein FtsI [Peptidoglycan synthetase].
  
  
0.935
ftsW
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.873
SFV72137.1
Rod shape-determining protein MreB.
 
 
 0.825
SFV73899.1
Rod shape-determining protein MreD.
       0.789
SFV72766.1
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.782
SFV73272.1
Multimodular transpeptidase-transglycosylase.
  
 
 
 0.710
SFV72233.1
FIG00602496: hypothetical protein.
  
 
 0.653
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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