STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74025.1Phosphosulfolactate synthase. (225 aa)    
Predicted Functional Partners:
SFV74026.1
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1); Belongs to the binding-protein-dependent transport system permease family.
       0.773
SFV74027.1
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1); Belongs to the binding-protein-dependent transport system permease family.
       0.757
hypB
[NiFe] hydrogenase nickel incorporation-associated protein HypB.
  
    0.730
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
   
    0.631
SFV74289.1
DNA topoisomerase III.
   
    0.631
SFV74028.1
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1).
       0.603
SFV74029.1
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1).
       0.455
SFV73006.1
Teichoic acid biosynthesis related protein.
  
     0.433
SFV73128.1
Conserved hypothetical protein.
   
  
 0.426
SFV72120.1
Anaerobic dimethyl sulfoxide reductase chain B.
   
    0.424
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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