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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74135.1Probable low-affinity inorganic phosphate transporter. (334 aa)    
Predicted Functional Partners:
SFV74134.1
Phosphate transport regulator (distant homolog of PhoU).
 
  
 0.981
SFV74133.1
Ribosomal large subunit pseudouridine synthase D.
  
    0.454
SFV73587.1
Large repetitive protein.
 
   
 0.449
SFV74131.1
Werner syndrome helicase homolog.
       0.449
SFV74132.1
FIG00607008: hypothetical protein.
       0.449
nifU
Iron-sulfur cluster assembly scaffold protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.445
cobA
Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase.
  
  
 0.427
SFV72241.1
Glutamate synthase [NADPH] large chain.
  
  
 0.417
SFV74193.1
2-acylglycerophosphoethanolamine acyltransferase.
  
  
 0.411
SFV74129.1
RNA-binding protein Jag.
  
   0.410
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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