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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74142.1Hydrogenase-4 component E. (206 aa)    
Predicted Functional Partners:
SFV74140.1
Ni,Fe-hydrogenase III large subunit.
 
  
 0.997
SFV74139.1
NADH ubiquinone oxidoreductase 20 kDa subunit.
 
  
 0.976
SFV74141.1
Hydrogenase-4 component F.
 
  
 0.966
SFV74143.1
Formate hydrogenlyase subunit 4.
 
  
 0.964
SFV74144.1
Hydrogenase-4 component B / Formate hydrogenlyase subunit 3.
 
  
 0.960
SFV74069.1
Carbon monoxide-induced hydrogenase small subunit CooL.
 
  
 0.639
SFV74065.1
Carbon monoxide-induced hydrogenase large subunit CooH.
  
  
 0.521
nifJ
Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.
     
 0.406
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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