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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedFHypothetical protein Cj1505c. (203 aa)    
Predicted Functional Partners:
selB
Selenocysteine-specific translation elongation factor.
 
   
 0.779
SFV72225.1
Glutamate synthase [NADPH] large chain.
 
  
 0.774
selD
Selenide,water dikinase @ selenocysteine-containing.
 
   
 0.765
nifS
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 
 0.732
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.716
SFV72528.1
2-hydroxyglutaryl-CoA dehydratase, D-component.
 
    0.709
SFV72925.1
Selenium-dependent molybdenum hydroxylase system protein YqeB.
 
 
 
 0.590
SFV74228.1
Hypothetical protein.
       0.560
SFV72224.1
FIG00602933: hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
     0.500
SFV73938.1
NADH dehydrogenase.
  
  
 0.479
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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