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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74283.1Transcriptional regulator, AbrB family. (57 aa)    
Predicted Functional Partners:
SFV74286.1
IcmP (DotM) protein.
 
     0.831
SFV74285.1
IncF plasmid conjugative transfer protein TraD.
 
     0.774
SFV74282.1
Helicase, Snf2 family.
 
     0.761
SFV74290.1
Antirestriction protein.
 
     0.726
SFV74287.1
Hpa2 protein.
 
     0.722
SFV74293.1
DotC protein.
 
     0.694
SFV74295.1
IncI1 plasmid conjugative transfer integral membrane protein TraY.
  
     0.674
SFV74281.1
IncP-type DNA relaxase TraI.
  
     0.664
SFV74304.1
IcmK (DotH) protein.
  
     0.634
SFV74300.1
IcmL (DotI) protein.
  
     0.573
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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