Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFV74303.1IcmE (DotG) protein. (251 aa)    
Predicted Functional Partners:
SFV74299.1
IcmB (DotO) protein.
 
 
 0.995
SFV74300.1
IcmL (DotI) protein.
 
   
 0.941
SFV74304.1
IcmK (DotH) protein.
 
 
 
 0.936
SFV74293.1
DotC protein.
  
 
 
 0.892
SFV74295.1
IncI1 plasmid conjugative transfer integral membrane protein TraY.
  
 
   0.874
SFV74285.1
IncF plasmid conjugative transfer protein TraD.
 
 
 
 0.862
SFV74286.1
IcmP (DotM) protein.
 
   
 0.811
SFV74302.1
Hypothetical protein.
     
 0.808
SFV74290.1
Antirestriction protein.
 
     0.795
SFV74281.1
IncP-type DNA relaxase TraI.
 
   
 0.776
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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