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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74320.1OLIGOPEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN. (260 aa)    
Predicted Functional Partners:
SFV74318.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
 
 0.994
SFV72264.1
Nickel transport system permease protein NikC (TC 3.A.1.5.3).
 
 0.981
SFV74317.1
Dipeptide transport system permease protein DppB (TC 3.A.1.5.2).
 
 
 0.977
SFV72265.1
Nickel transport system permease protein NikB (TC 3.A.1.5.3).
 
 
 0.954
nikA-2
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 
 0.953
SFV72502.1
Dipeptide transport system permease protein DppC (TC 3.A.1.5.2).
  
 0.947
nikA
Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3).
 
 
 0.929
SFV72262.1
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3).
  
  
 
0.909
SFV72685.1
ABC transporter, ATP-binding protein.
 
     0.744
SFV74319.1
Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1).
 
   
0.710
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
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