STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV74395.1Catalase; Belongs to the catalase family. (485 aa)    
Predicted Functional Partners:
SFV74105.1
Glycolate dehydrogenase, subunit GlcD.
   
 0.915
SFV74106.1
Predicted glycolate dehydrogenase, 2-subunit type, iron-sulfur subunit GlcF.
     
  0.900
msrA
Peptide methionine sulfoxide reductase MsrB / Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.734
SFV72782.1
Capsular polysaccharide biosynthesis fatty acid synthase WcbR.
   
 0.606
trxB
Thioredoxin reductase.
   
 
 0.542
trxB-2
Thioredoxin reductase.
   
 
 0.542
SFV72916.1
ThiJ/PfpI family protein.
  
 
 0.537
SFV72441.1
2,4-dienoyl-CoA reductase [NADPH].
   
 
 0.520
SFV73627.1
Isocitrate dehydrogenase [NADP].
   
 0.503
SFV72697.1
Heterodisulfide reductase, cytochrome reductase subunit.
  
  
 0.490
Your Current Organism:
Desulfovibrio piger
NCBI taxonomy Id: 901
Other names: ATCC 29098, D. piger, DSM 749, Desulfomonas pigra
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.