H355_013025 protein (Colinus virginianus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H355_013025

Helicase C-terminal domain-containing protein. (183 aa)

Predicted Functional Partners:

H355_010717

0.978

H355_015857

0.975

H355_015821

0.975

H355_013107

0.956

H355_016777

0.938

H355_005319

0.932

H355_006962

0.932

H355_001488

0.928

H355_001058

0.921

H355_010585

0.920

Your Current Organism:

Colinus virginianus

NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H355_001058	H355_013025	A0A226NVY2	A0A226MAT7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.921
H355_001058	H355_013107	A0A226NVY2	A0A226PW99	Uncharacterized protein.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.996
H355_001058	H355_015821	A0A226NVY2	A0A226PDL1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.910
H355_001058	H355_015857	A0A226NVY2	A0A226NQ30	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.910
H355_001488	H355_005319	A0A226NZP0	A0A226NQM8	Uncharacterized protein.	KH domain-containing protein.	0.998
H355_001488	H355_006962	A0A226NZP0	A0A226PKU8	Uncharacterized protein.	Uncharacterized protein.	0.998
H355_001488	H355_010717	A0A226NZP0	A0A226MMM0	Uncharacterized protein.	Uncharacterized protein.	0.951
H355_001488	H355_013025	A0A226NZP0	A0A226MAT7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.928
H355_001488	H355_015821	A0A226NZP0	A0A226PDL1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.673
H355_001488	H355_015857	A0A226NZP0	A0A226NQ30	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.673
H355_001488	H355_016777	A0A226NZP0	A0A226P9R2	Uncharacterized protein.	Uncharacterized protein.	0.990
H355_005319	H355_001488	A0A226NQM8	A0A226NZP0	KH domain-containing protein.	Uncharacterized protein.	0.998
H355_005319	H355_013025	A0A226NQM8	A0A226MAT7	KH domain-containing protein.	Helicase C-terminal domain-containing protein.	0.932
H355_005319	H355_015821	A0A226NQM8	A0A226PDL1	KH domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.778
H355_005319	H355_015857	A0A226NQM8	A0A226NQ30	KH domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.778
H355_005319	H355_016777	A0A226NQM8	A0A226P9R2	KH domain-containing protein.	Uncharacterized protein.	0.935
H355_006962	H355_001488	A0A226PKU8	A0A226NZP0	Uncharacterized protein.	Uncharacterized protein.	0.998
H355_006962	H355_013025	A0A226PKU8	A0A226MAT7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.932
H355_006962	H355_015821	A0A226PKU8	A0A226PDL1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.778
H355_006962	H355_015857	A0A226PKU8	A0A226NQ30	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.778