H355_009701 protein (Colinus virginianus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H355_009701

Uncharacterized protein. (378 aa)

Predicted Functional Partners:

H355_005505

0.895

H355_004513

0.801

H355_013551

0.606

H355_012639

0.596

H355_000611

0.557

H355_007230

0.557

H355_014464

0.556

H355_005172

0.556

H355_003688

0.555

H355_008515

0.555

Your Current Organism:

Colinus virginianus

NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H355_000611	H355_003688	A0A226PCT0	A0A226NTD7	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.460
H355_000611	H355_005505	A0A226PCT0	A0A226MB70	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	BTB domain-containing protein.	0.557
H355_000611	H355_007230	A0A226PCT0	A0A226PEH6	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.999
H355_000611	H355_008515	A0A226PCT0	A0A226NTY1	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	JmjC domain-containing protein.	0.460
H355_000611	H355_009701	A0A226PCT0	A0A226MCN8	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.557
H355_003688	H355_000611	A0A226NTD7	A0A226PCT0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.460
H355_003688	H355_004513	A0A226NTD7	A0A226NRJ9	Uncharacterized protein.	Uncharacterized protein.	0.922
H355_003688	H355_005172	A0A226NTD7	A0A226PBQ8	Uncharacterized protein.	Uncharacterized protein.	0.452
H355_003688	H355_005505	A0A226NTD7	A0A226MB70	Uncharacterized protein.	BTB domain-containing protein.	0.555
H355_003688	H355_007230	A0A226NTD7	A0A226PEH6	Uncharacterized protein.	Uncharacterized protein.	0.503
H355_003688	H355_008515	A0A226NTD7	A0A226NTY1	Uncharacterized protein.	JmjC domain-containing protein.	0.986
H355_003688	H355_009701	A0A226NTD7	A0A226MCN8	Uncharacterized protein.	Uncharacterized protein.	0.555
H355_003688	H355_012639	A0A226NTD7	A0A226NQM5	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.805
H355_003688	H355_013551	A0A226NTD7	A0A226P6S6	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.611
H355_004513	H355_003688	A0A226NRJ9	A0A226NTD7	Uncharacterized protein.	Uncharacterized protein.	0.922
H355_004513	H355_005505	A0A226NRJ9	A0A226MB70	Uncharacterized protein.	BTB domain-containing protein.	0.801
H355_004513	H355_008515	A0A226NRJ9	A0A226NTY1	Uncharacterized protein.	JmjC domain-containing protein.	0.922
H355_004513	H355_009701	A0A226NRJ9	A0A226MCN8	Uncharacterized protein.	Uncharacterized protein.	0.801
H355_004513	H355_012639	A0A226NRJ9	A0A226NQM5	Uncharacterized protein.	ATPase_AAA_core domain-containing protein.	0.993
H355_005172	H355_003688	A0A226PBQ8	A0A226NTD7	Uncharacterized protein.	Uncharacterized protein.	0.452