H355_000855 protein (Colinus virginianus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H355_000855

Tudor domain-containing protein. (447 aa)

Predicted Functional Partners:

H355_016114

0.739

H355_000110

0.719

H355_001651

0.604

H355_012896

0.604

H355_005507

0.595

H355_006939

0.592

H355_009056

0.592

H355_006178

0.586

H355_000746

0.586

H355_005299

0.578

Your Current Organism:

Colinus virginianus

NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H355_000110	H355_000855	A0A226P5L6	A0A226NET2	Uncharacterized protein.	Tudor domain-containing protein.	0.719
H355_000110	H355_005299	A0A226P5L6	A0A226P1J7	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.970
H355_000110	H355_005507	A0A226P5L6	A0A226NYI5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.799
H355_000746	H355_000855	A0A226PS28	A0A226NET2	Uncharacterized protein.	Tudor domain-containing protein.	0.586
H355_000855	H355_000110	A0A226NET2	A0A226P5L6	Tudor domain-containing protein.	Uncharacterized protein.	0.719
H355_000855	H355_000746	A0A226NET2	A0A226PS28	Tudor domain-containing protein.	Uncharacterized protein.	0.586
H355_000855	H355_001651	A0A226NET2	A0A226NV62	Tudor domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.604
H355_000855	H355_005299	A0A226NET2	A0A226P1J7	Tudor domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.578
H355_000855	H355_005507	A0A226NET2	A0A226NYI5	Tudor domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.595
H355_000855	H355_006178	A0A226NET2	A0A226PDW7	Tudor domain-containing protein.	Uncharacterized protein.	0.586
H355_000855	H355_006939	A0A226NET2	A0A226PL60	Tudor domain-containing protein.	HABP4_PAI-RBP1 domain-containing protein.	0.592
H355_000855	H355_009056	A0A226NET2	A0A226PS10	Tudor domain-containing protein.	HABP4_PAI-RBP1 domain-containing protein.	0.592
H355_000855	H355_012896	A0A226NET2	A0A226P885	Tudor domain-containing protein.	Uncharacterized protein.	0.604
H355_000855	H355_016114	A0A226NET2	A0A226PZU4	Tudor domain-containing protein.	Uncharacterized protein; Belongs to the argonaute family.	0.739
H355_001651	H355_000855	A0A226NV62	A0A226NET2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Tudor domain-containing protein.	0.604
H355_001651	H355_005299	A0A226NV62	A0A226P1J7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Helicase ATP-binding domain-containing protein.	0.439
H355_001651	H355_005507	A0A226NV62	A0A226NYI5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.947
H355_001651	H355_006939	A0A226NV62	A0A226PL60	Uncharacterized protein; Belongs to the DEAD box helicase family.	HABP4_PAI-RBP1 domain-containing protein.	0.509
H355_001651	H355_009056	A0A226NV62	A0A226PS10	Uncharacterized protein; Belongs to the DEAD box helicase family.	HABP4_PAI-RBP1 domain-containing protein.	0.600
H355_005299	H355_000110	A0A226P1J7	A0A226P5L6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.970