STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H355_013995R3H domain-containing protein. (79 aa)    
Predicted Functional Partners:
H355_008325
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.817
H355_009705
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
     
 0.762
H355_000233
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
 
 0.722
H355_011144
Peptidylprolyl isomerase.
    
   0.706
H355_010798
Peptidylprolyl isomerase.
    
   0.706
H355_016722
Uncharacterized protein.
 
      0.687
H355_016010
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
 
 0.677
H355_008323
Uncharacterized protein.
    
   0.673
H355_013856
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
    
   0.671
H355_011875
Uncharacterized protein.
   
   0.671
Your Current Organism:
Colinus virginianus
NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite
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