H355_014569 protein (Colinus virginianus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H355_014569

PH domain-containing protein. (113 aa)

Predicted Functional Partners:

H355_014568

0.768

H355_013916

0.679

H355_002609

0.679

H355_002344

0.669

H355_014463

0.650

H355_011463

0.620

H355_000131

0.620

H355_006785

0.620

H355_003913

0.620

H355_007184

0.620

Your Current Organism:

Colinus virginianus

NCBI taxonomy Id: 9014
Other names: C. virginianus, bobwhite quail, common bobwhite, northern bobwhite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H355_000131	H355_002344	A0A226NQB8	A0A226PCN9	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.516
H355_000131	H355_003913	A0A226NQB8	A0A226PSF6	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.680
H355_000131	H355_011463	A0A226NQB8	A0A226NQ19	Ras-GAP domain-containing protein.	Ras-GAP domain-containing protein.	0.652
H355_000131	H355_014463	A0A226NQB8	A0A226NTV8	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.439
H355_000131	H355_014568	A0A226NQB8	A0A226P2B5	Ras-GAP domain-containing protein.	Uncharacterized protein.	0.620
H355_000131	H355_014569	A0A226NQB8	A0A226P2B9	Ras-GAP domain-containing protein.	PH domain-containing protein.	0.620
H355_002344	H355_000131	A0A226PCN9	A0A226NQB8	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.516
H355_002344	H355_002609	A0A226PCN9	A0A226PG30	Uncharacterized protein.	Sema domain-containing protein.	0.735
H355_002344	H355_003913	A0A226PCN9	A0A226PSF6	Uncharacterized protein.	Uncharacterized protein.	0.746
H355_002344	H355_006785	A0A226PCN9	A0A226P9F9	Uncharacterized protein.	Uncharacterized protein.	0.516
H355_002344	H355_007184	A0A226PCN9	A0A226PWA3	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.516
H355_002344	H355_011463	A0A226PCN9	A0A226NQ19	Uncharacterized protein.	Ras-GAP domain-containing protein.	0.521
H355_002344	H355_013916	A0A226PCN9	A0A226PFY1	Uncharacterized protein.	Sema domain-containing protein.	0.745
H355_002344	H355_014568	A0A226PCN9	A0A226P2B5	Uncharacterized protein.	Uncharacterized protein.	0.669
H355_002344	H355_014569	A0A226PCN9	A0A226P2B9	Uncharacterized protein.	PH domain-containing protein.	0.669
H355_002609	H355_002344	A0A226PG30	A0A226PCN9	Sema domain-containing protein.	Uncharacterized protein.	0.735
H355_002609	H355_013916	A0A226PG30	A0A226PFY1	Sema domain-containing protein.	Sema domain-containing protein.	0.800
H355_002609	H355_014463	A0A226PG30	A0A226NTV8	Sema domain-containing protein.	Uncharacterized protein.	0.628
H355_002609	H355_014568	A0A226PG30	A0A226P2B5	Sema domain-containing protein.	Uncharacterized protein.	0.679
H355_002609	H355_014569	A0A226PG30	A0A226P2B9	Sema domain-containing protein.	PH domain-containing protein.	0.679