STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnBUnannotated protein; Belongs to the aconitase/IPM isomerase family. (863 aa)    
Predicted Functional Partners:
icd
Unannotated protein.
  
 
 0.967
gltA
Unannotated protein; Belongs to the citrate synthase family.
  
 
 0.967
acnA
Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 0.940
prpF
Unannotated protein.
 
  
 0.919
prpB
Unannotated protein; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
     
 0.919
CJ230_06845
Unannotated protein.
     
 0.907
mdh
Unannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.808
sucA
Unannotated protein.
   
  
 0.762
sucC
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
  
 0.759
sdhC
Unannotated protein.
  
  
 0.649
Your Current Organism:
Oligella urethralis
NCBI taxonomy Id: 90245
Other names: ATCC 17960, CCUG 13463, CCUG 37823, CDC 7603, CIP 103116, DSM 7531, IFO 14589, JCM 20913, LMG 5303, LMG:5303, Moraxella urethralis, NBRC 14589, NCTC 12964, O. urethralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.