STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1X2INY0ATP-dependent RNA helicase DHH1; Belongs to the DEAD box helicase family. (516 aa)    
Predicted Functional Partners:
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.989
A0A1X2HK60
Topoisomerase II-associated protein PAT1-domain-containing protein.
   
 0.975
A0A1X2IK98
Topoisomerase II-associated protein PAT1.
   
 0.975
A0A1X2IIV8
YjeF N-terminal domain-containing protein.
    
 0.974
A0A1X2IY29
YjeF N-terminal domain-containing protein.
    
 0.974
A0A1X2HRD2
Sm domain-containing protein.
    
 0.972
A0A1X2IBB9
Sm domain-containing protein.
    
 0.972
A0A1X2HYD0
Uncharacterized protein.
   
 0.971
A0A1X2HZN1
Dcp1-like decapping.
   
 0.971
A0A1X2IZ59
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.
    
 0.963
Your Current Organism:
Absidia repens
NCBI taxonomy Id: 90262
Other names: A. repens, CBS 115583
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