STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APP86802.1S9 family peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (786 aa)    
Predicted Functional Partners:
APP83607.1
Autotransporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.908
APP84345.1
Oar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
APP83103.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.728
APP83474.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.691
APP82878.1
2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
APP86129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.682
APP85690.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.659
hppA
Sodium-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
  
 0.648
APP83616.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.633
APP83787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.633
Your Current Organism:
Xanthomonas gardneri
NCBI taxonomy Id: 90270
Other names: ATCC 19865, DSM 19127, ICMP 16689, NCPPB 881, Pseudomonas gardneri, X. gardneri
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