STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRM1Serine/arginine repetitive matrix protein 1; Involved in pre-mRNA splicing and processing events. Belongs to the splicing factor SR family. (924 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 
 0.947
UPF1
UPF1 RNA helicase and ATPase.
   
 
 0.942
ALYREF
RRM domain-containing protein.
   
 0.940
UPF3B
Smg4_UPF3 domain-containing protein.
    
 0.938
RNPS1
RNA binding protein with serine rich domain 1.
   
 0.932
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
    
 
 0.910
SRRM3
Serine/arginine repetitive matrix 3.
   
 
 0.897
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.888
WBP11
Uncharacterized protein.
   
 
 0.867
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.865
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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