CRIPT protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRIPT

Cysteine-rich PDZ-binding protein. (101 aa)

Predicted Functional Partners:

ARMC7

0.823

METTL2B

0.786

PHF5A

0.745

SF3B1

0.739

RNF113B

0.738

SF3B3

0.738

PRPF8

0.738

ZER1

0.704

ZYG11A

0.585

CWC15

0.573

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC7	CRIPT	ENSGALP00000012915	ENSGALP00000016245	Uncharacterized protein.	Cysteine-rich PDZ-binding protein.	0.823
ARMC7	CWC15	ENSGALP00000012915	ENSGALP00000061091	Uncharacterized protein.	Uncharacterized protein.	0.819
ARMC7	PHF5A	ENSGALP00000012915	ENSGALP00000019471	Uncharacterized protein.	Uncharacterized protein.	0.823
ARMC7	PRPF8	ENSGALP00000012915	ENSGALP00000004641	Uncharacterized protein.	Pre-mRNA processing factor 8.	0.817
ARMC7	RNF113B	ENSGALP00000012915	ENSGALP00000000742	Uncharacterized protein.	Zinc finger protein 183.	0.817
ARMC7	SF3B1	ENSGALP00000012915	ENSGALP00000013029	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.817
ARMC7	SF3B3	ENSGALP00000012915	ENSGALP00000003978	Uncharacterized protein.	Splicing factor 3b subunit 3.	0.817
CRIPT	ARMC7	ENSGALP00000016245	ENSGALP00000012915	Cysteine-rich PDZ-binding protein.	Uncharacterized protein.	0.823
CRIPT	CWC15	ENSGALP00000016245	ENSGALP00000061091	Cysteine-rich PDZ-binding protein.	Uncharacterized protein.	0.573
CRIPT	METTL2B	ENSGALP00000016245	ENSGALP00000055408	Cysteine-rich PDZ-binding protein.	tRNA N(3)-methylcytidine methyltransferase METTL2; S-adenosyl-L-methionine-dependent methyltransferase that mediates N(3)-methylcytidine modification of residue 32 of the tRNA anticodon loop of tRNA(Thr)(UGU) and tRNA(Arg)(CCU).	0.786
CRIPT	PHF5A	ENSGALP00000016245	ENSGALP00000019471	Cysteine-rich PDZ-binding protein.	Uncharacterized protein.	0.745
CRIPT	PRPF8	ENSGALP00000016245	ENSGALP00000004641	Cysteine-rich PDZ-binding protein.	Pre-mRNA processing factor 8.	0.738
CRIPT	RNF113B	ENSGALP00000016245	ENSGALP00000000742	Cysteine-rich PDZ-binding protein.	Zinc finger protein 183.	0.738
CRIPT	SF3B1	ENSGALP00000016245	ENSGALP00000013029	Cysteine-rich PDZ-binding protein.	Splicing factor 3b subunit 1.	0.739
CRIPT	SF3B3	ENSGALP00000016245	ENSGALP00000003978	Cysteine-rich PDZ-binding protein.	Splicing factor 3b subunit 3.	0.738
CRIPT	ZER1	ENSGALP00000016245	ENSGALP00000007412	Cysteine-rich PDZ-binding protein.	Zyg-11 related cell cycle regulator.	0.704
CRIPT	ZYG11A	ENSGALP00000016245	ENSGALP00000017295	Cysteine-rich PDZ-binding protein.	Zyg-11 family member B, cell cycle regulator.	0.585
CWC15	ARMC7	ENSGALP00000061091	ENSGALP00000012915	Uncharacterized protein.	Uncharacterized protein.	0.819
CWC15	CRIPT	ENSGALP00000061091	ENSGALP00000016245	Uncharacterized protein.	Cysteine-rich PDZ-binding protein.	0.573
CWC15	PHF5A	ENSGALP00000061091	ENSGALP00000019471	Uncharacterized protein.	Uncharacterized protein.	0.968