STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBC1D15Rab-GAP TBC domain-containing protein. (667 aa)    
Predicted Functional Partners:
FIS1
Fission, mitochondrial 1.
    
 0.963
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.936
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.929
RAB7A
RAB7A, member RAS oncogene family.
   
 0.925
RAB7B
RAB7B, member RAS oncogene family.
   
 0.924
ZNF536
Zinc finger protein 536.
      
 0.768
CPNE8
Uncharacterized protein.
   
  
 0.765
ZFC3H1
Zinc finger C3H1-type containing.
   
  
 0.747
PPP1R13B
Protein phosphatase 1 regulatory subunit 13B.
      
 0.741
PPP4R1
Protein phosphatase 4 regulatory subunit 1.
      
 0.732
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.