EFCAB11 protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFCAB11

EF-hand calcium binding domain 11. (229 aa)

Predicted Functional Partners:

WDR90

0.578

CFAP20

0.552

NDRG4

0.522

CASK

0.518

KCNA3

0.500

EFHC2

0.495

IQCK

0.479

CNOT1

0.472

AMPD2

0.466

EFCAB2

0.456

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMPD2	CFAP20	ENSGALP00000049271	ENSGALP00000064104	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	0.513
AMPD2	CNOT1	ENSGALP00000049271	ENSGALP00000003612	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	Uncharacterized protein.	0.501
AMPD2	EFCAB11	ENSGALP00000049271	ENSGALP00000031904	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	EF-hand calcium binding domain 11.	0.466
AMPD2	KCNA3	ENSGALP00000049271	ENSGALP00000052492	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	BTB domain-containing protein; Belongs to the potassium channel family.	0.513
AMPD2	NDRG4	ENSGALP00000049271	ENSGALP00000043640	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	NDRG family member 4.	0.439
CASK	EFCAB11	ENSGALP00000048702	ENSGALP00000031904	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	EF-hand calcium binding domain 11.	0.518
CASK	EFCAB2	ENSGALP00000048702	ENSGALP00000041233	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	EF-hand calcium binding domain 2.	0.518
CFAP20	AMPD2	ENSGALP00000064104	ENSGALP00000049271	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.513
CFAP20	CNOT1	ENSGALP00000064104	ENSGALP00000003612	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	Uncharacterized protein.	0.465
CFAP20	EFCAB11	ENSGALP00000064104	ENSGALP00000031904	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	EF-hand calcium binding domain 11.	0.552
CFAP20	EFHC2	ENSGALP00000064104	ENSGALP00000026102	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	EF-hand domain-containing family member C2.	0.712
CFAP20	KCNA3	ENSGALP00000064104	ENSGALP00000052492	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	BTB domain-containing protein; Belongs to the potassium channel family.	0.499
CFAP20	NDRG4	ENSGALP00000064104	ENSGALP00000043640	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	NDRG family member 4.	0.442
CNOT1	AMPD2	ENSGALP00000003612	ENSGALP00000049271	Uncharacterized protein.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.501
CNOT1	CFAP20	ENSGALP00000003612	ENSGALP00000064104	Uncharacterized protein.	Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity); Belongs to the CFAP20 family.	0.465
CNOT1	EFCAB11	ENSGALP00000003612	ENSGALP00000031904	Uncharacterized protein.	EF-hand calcium binding domain 11.	0.472
CNOT1	KCNA3	ENSGALP00000003612	ENSGALP00000052492	Uncharacterized protein.	BTB domain-containing protein; Belongs to the potassium channel family.	0.476
CNOT1	NDRG4	ENSGALP00000003612	ENSGALP00000043640	Uncharacterized protein.	NDRG family member 4.	0.505
EFCAB11	AMPD2	ENSGALP00000031904	ENSGALP00000049271	EF-hand calcium binding domain 11.	AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.	0.466
EFCAB11	CASK	ENSGALP00000031904	ENSGALP00000048702	EF-hand calcium binding domain 11.	Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.	0.518