STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD7-2Uncharacterized protein. (548 aa)    
Predicted Functional Partners:
PDZD7
PDZ domain-containing protein.
 
   
 0.968
USH2A
Usherin.
   
 
 0.950
USH1C-2
Uncharacterized protein.
      
 0.871
USH1G
USH1 protein network component sans.
    
 
 0.855
CLRN1
Clarin 1.
      
 0.810
USH1C
USH1 protein network component harmonin.
     
0.804
CDH23
Cadherin related 23.
    
 
 0.786
ADGRV1
Uncharacterized protein.
    
 
 0.782
CIB2
Uncharacterized protein.
    
 
 0.761
PCDH15
Protocadherin-15; Calcium-dependent cell-adhesion protein. Required for inner ear neuroepithelial cell elaboration and cochlear function. Probably involved in the maintenance of normal retinal function (By similarity).
    
 
 0.751
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.