CRMP1 protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRMP1

Collapsin response mediator protein-1A. (683 aa)

Predicted Functional Partners:

SEMA3A

0.850

CDK5

0.813

DPYD

0.772

PLXNA1

0.761

PLXNA4

0.748

DHODH

0.737

CPS1

0.736

UMPS

0.728

GART-B

0.727

GART

0.727

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK5	CRMP1	ENSGALP00000068854	ENSGALP00000044908	Protein kinase domain-containing protein.	Collapsin response mediator protein-1A.	0.813
CDK5	PLXNA1	ENSGALP00000068854	ENSGALP00000069384	Protein kinase domain-containing protein.	Plexin A1.	0.686
CDK5	PLXNA4	ENSGALP00000068854	ENSGALP00000010443	Protein kinase domain-containing protein.	Plexin A4.	0.670
CDK5	SEMA3A	ENSGALP00000068854	ENSGALP00000042260	Protein kinase domain-containing protein.	Semaphorin-3A; Induces the collapse and paralysis of neuronal growth cones. Could serve as a ligand that guides specific growth cones by a motility-inhibiting mechanism. Binds to neuropilin; Belongs to the semaphorin family.	0.845
CPS1	CRMP1	ENSGALP00000004647	ENSGALP00000044908	Uncharacterized protein.	Collapsin response mediator protein-1A.	0.736
CPS1	DHODH	ENSGALP00000004647	ENSGALP00000001161	Uncharacterized protein.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.900
CPS1	DPYD	ENSGALP00000004647	ENSGALP00000065717	Uncharacterized protein.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.826
CPS1	GART	ENSGALP00000004647	ENSGALP00000049365	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the central section; belongs to the AIR synthase family.	0.824
CPS1	GART-B	ENSGALP00000004647	ENSGALP00000043823	Uncharacterized protein.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.824
CPS1	UMPS	ENSGALP00000004647	ENSGALP00000019192	Uncharacterized protein.	OMPdecase domain-containing protein.	0.921
CRMP1	CDK5	ENSGALP00000044908	ENSGALP00000068854	Collapsin response mediator protein-1A.	Protein kinase domain-containing protein.	0.813
CRMP1	CPS1	ENSGALP00000044908	ENSGALP00000004647	Collapsin response mediator protein-1A.	Uncharacterized protein.	0.736
CRMP1	DHODH	ENSGALP00000044908	ENSGALP00000001161	Collapsin response mediator protein-1A.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.737
CRMP1	DPYD	ENSGALP00000044908	ENSGALP00000065717	Collapsin response mediator protein-1A.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.772
CRMP1	GART	ENSGALP00000044908	ENSGALP00000049365	Collapsin response mediator protein-1A.	Trifunctional purine biosynthetic protein adenosine-3; In the central section; belongs to the AIR synthase family.	0.727
CRMP1	GART-B	ENSGALP00000044908	ENSGALP00000043823	Collapsin response mediator protein-1A.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.727
CRMP1	PLXNA1	ENSGALP00000044908	ENSGALP00000069384	Collapsin response mediator protein-1A.	Plexin A1.	0.761
CRMP1	PLXNA4	ENSGALP00000044908	ENSGALP00000010443	Collapsin response mediator protein-1A.	Plexin A4.	0.748
CRMP1	SEMA3A	ENSGALP00000044908	ENSGALP00000042260	Collapsin response mediator protein-1A.	Semaphorin-3A; Induces the collapse and paralysis of neuronal growth cones. Could serve as a ligand that guides specific growth cones by a motility-inhibiting mechanism. Binds to neuropilin; Belongs to the semaphorin family.	0.850
CRMP1	UMPS	ENSGALP00000044908	ENSGALP00000019192	Collapsin response mediator protein-1A.	OMPdecase domain-containing protein.	0.728