STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE2Synapse defective Rho GTPase homolog 2. (982 aa)    
Predicted Functional Partners:
ELP4
Elongator acetyltransferase complex subunit 4.
      
 0.759
SUPT7L
SPT7 like, STAGA complex gamma subunit.
      
 0.725
RBM18
RNA binding motif protein 18.
      
 0.702
SULT1B
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.701
PPP1R7
LRRcap domain-containing protein.
      
 0.679
LOC422513
HECT domain-containing protein.
      
 0.668
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
      
 0.654
RASL11B
RAS like family 11 member B.
    
 
 0.648
PCGF6
Polycomb group ring finger 6.
      
 0.646
CMTR1
Cap methyltransferase 1.
      
 0.644
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.