STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP6NLRab-GAP TBC domain-containing protein. (841 aa)    
Predicted Functional Partners:
RAB43
Uncharacterized protein.
    
 0.747
KIF16B
Kinesin family member 16B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.643
SGCZ
Sarcoglycan zeta.
      
 0.622
AGMO
Alkylglycerol monooxygenase; Belongs to the sterol desaturase family.
    
 
 0.606
ADAMTSL3
Uncharacterized protein.
      
 0.601
CAMK4
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.584
RFX3
Regulatory factor X3.
   
  
 0.534
GTF2I
Uncharacterized protein.
   
  
 0.522
BCO2
Beta-carotene oxygenase 2.
      
 0.519
PDE10A
Phosphodiesterase.
      
 0.506
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.