GAPVD1 protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAPVD1

Uncharacterized protein. (1488 aa)

Predicted Functional Partners:

RABEP1

0.809

RAB17

0.790

RAB21

0.789

ANKFY1

0.785

TBC1D8B

0.780

RAB5C

0.737

RAB5A

0.737

RAB5B

0.737

UBL7

0.703

ALS2

0.680

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALS2	GAPVD1	ENSGALP00000013692	ENSGALP00000066133	Alsin Rho guanine nucleotide exchange factor ALS2.	Uncharacterized protein.	0.680
ALS2	RAB5A	ENSGALP00000013692	ENSGALP00000018371	Alsin Rho guanine nucleotide exchange factor ALS2.	Uncharacterized protein.	0.574
ALS2	RAB5B	ENSGALP00000013692	ENSGALP00000056524	Alsin Rho guanine nucleotide exchange factor ALS2.	Ras-related protein Rab-5B; Protein transport. Probably involved in vesicular traffic (By similarity); Belongs to the small GTPase superfamily. Rab family.	0.574
ALS2	RAB5C	ENSGALP00000013692	ENSGALP00000005302	Alsin Rho guanine nucleotide exchange factor ALS2.	Ras-related protein Rab-5C; Protein transport. Probably involved in vesicular traffic (By similarity).	0.574
ANKFY1	GAPVD1	ENSGALP00000002221	ENSGALP00000066133	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.785
ANKFY1	RAB17	ENSGALP00000002221	ENSGALP00000006186	Ankyrin repeat and FYVE domain containing 1.	RAB17, member RAS oncogene family.	0.564
ANKFY1	RAB5A	ENSGALP00000002221	ENSGALP00000018371	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.564
ANKFY1	RAB5B	ENSGALP00000002221	ENSGALP00000056524	Ankyrin repeat and FYVE domain containing 1.	Ras-related protein Rab-5B; Protein transport. Probably involved in vesicular traffic (By similarity); Belongs to the small GTPase superfamily. Rab family.	0.564
ANKFY1	RAB5C	ENSGALP00000002221	ENSGALP00000005302	Ankyrin repeat and FYVE domain containing 1.	Ras-related protein Rab-5C; Protein transport. Probably involved in vesicular traffic (By similarity).	0.564
ANKFY1	RABEP1	ENSGALP00000002221	ENSGALP00000059063	Ankyrin repeat and FYVE domain containing 1.	Uncharacterized protein.	0.537
ANKFY1	TBC1D8B	ENSGALP00000002221	ENSGALP00000014700	Ankyrin repeat and FYVE domain containing 1.	TBC1 domain family member 8B.	0.790
GAPVD1	ALS2	ENSGALP00000066133	ENSGALP00000013692	Uncharacterized protein.	Alsin Rho guanine nucleotide exchange factor ALS2.	0.680
GAPVD1	ANKFY1	ENSGALP00000066133	ENSGALP00000002221	Uncharacterized protein.	Ankyrin repeat and FYVE domain containing 1.	0.785
GAPVD1	RAB17	ENSGALP00000066133	ENSGALP00000006186	Uncharacterized protein.	RAB17, member RAS oncogene family.	0.790
GAPVD1	RAB21	ENSGALP00000066133	ENSGALP00000016534	Uncharacterized protein.	RAB21, member RAS oncogene family.	0.789
GAPVD1	RAB5A	ENSGALP00000066133	ENSGALP00000018371	Uncharacterized protein.	Uncharacterized protein.	0.737
GAPVD1	RAB5B	ENSGALP00000066133	ENSGALP00000056524	Uncharacterized protein.	Ras-related protein Rab-5B; Protein transport. Probably involved in vesicular traffic (By similarity); Belongs to the small GTPase superfamily. Rab family.	0.737
GAPVD1	RAB5C	ENSGALP00000066133	ENSGALP00000005302	Uncharacterized protein.	Ras-related protein Rab-5C; Protein transport. Probably involved in vesicular traffic (By similarity).	0.737
GAPVD1	RABEP1	ENSGALP00000066133	ENSGALP00000059063	Uncharacterized protein.	Uncharacterized protein.	0.809
GAPVD1	TBC1D8B	ENSGALP00000066133	ENSGALP00000014700	Uncharacterized protein.	TBC1 domain family member 8B.	0.780