STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LINS1Lines homolog 1. (761 aa)    
Predicted Functional Partners:
ACER1
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
    
 
 0.805
SPTLC1
Serine palmitoyltransferase long chain base subunit 1.
   
  
 0.770
SMPD2
Sphingomyelin phosphodiesterase 2.
      
 0.767
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
   
  
 0.743
CERS6
Ceramide synthase 6.
 
    
 0.740
NIPAL4
NIPA like domain containing 4.
      
 0.708
CERS4
Uncharacterized protein.
 
    
 0.707
CERS5
Ceramide synthase 5.
 
    
 0.704
ASAH2
Neutral ceramidase.
      
 0.698
PLPP2
Phospholipid phosphatase 2.
    
 
 0.634
Your Current Organism:
Gallus gallus
NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.