LOC107056305 protein (Gallus gallus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107056305

Uncharacterized protein. (314 aa)

Predicted Functional Partners:

ENSGALP00000072214

0.931

ENSGALP00000074323

0.899

POLR2B

0.853

ENSGALP00000066973

0.829

POLR2K

0.815

POLR2C

0.812

POLR2E

0.811

ENSGALP00000065087

0.808

POLR2F

0.806

POLR2I

0.806

Your Current Organism:

Gallus gallus

NCBI taxonomy Id: 9031
Other names: G. gallus, Gallus domesticus, Gallus gallus domesticus, bantam, chicken, chickens, dwarf Leghorn chickens, red junglefowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSGALP00000065087	ENSGALP00000072214	ENSGALP00000065087	ENSGALP00000072214	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.907
ENSGALP00000065087	ENSGALP00000074323	ENSGALP00000065087	ENSGALP00000074323	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.808
ENSGALP00000065087	LOC107056305	ENSGALP00000065087	ENSGALP00000070809	Uncharacterized protein.	Uncharacterized protein.	0.808
ENSGALP00000065087	POLR2B	ENSGALP00000065087	ENSGALP00000037170	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
ENSGALP00000065087	POLR2C	ENSGALP00000065087	ENSGALP00000001766	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
ENSGALP00000065087	POLR2E	ENSGALP00000065087	ENSGALP00000004071	Uncharacterized protein.	RNA polymerase II subunit E.	0.997
ENSGALP00000065087	POLR2F	ENSGALP00000065087	ENSGALP00000020057	Uncharacterized protein.	RNA polymerase common subunit RPB6.	0.997
ENSGALP00000065087	POLR2I	ENSGALP00000065087	ENSGALP00000051183	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.997
ENSGALP00000065087	POLR2K	ENSGALP00000065087	ENSGALP00000048614	Uncharacterized protein.	RNA polymerase II subunit K.	0.997
ENSGALP00000066973	ENSGALP00000072214	ENSGALP00000066973	ENSGALP00000072214	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.887
ENSGALP00000066973	LOC107056305	ENSGALP00000066973	ENSGALP00000070809	Uncharacterized protein.	Uncharacterized protein.	0.829
ENSGALP00000072214	ENSGALP00000065087	ENSGALP00000072214	ENSGALP00000065087	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.907
ENSGALP00000072214	ENSGALP00000066973	ENSGALP00000072214	ENSGALP00000066973	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.887
ENSGALP00000072214	LOC107056305	ENSGALP00000072214	ENSGALP00000070809	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.931
ENSGALP00000072214	POLR2B	ENSGALP00000072214	ENSGALP00000037170	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
ENSGALP00000072214	POLR2C	ENSGALP00000072214	ENSGALP00000001766	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOLD domain-containing protein.	0.910
ENSGALP00000072214	POLR2E	ENSGALP00000072214	ENSGALP00000004071	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit E.	0.909
ENSGALP00000072214	POLR2F	ENSGALP00000072214	ENSGALP00000020057	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase common subunit RPB6.	0.907
ENSGALP00000072214	POLR2I	ENSGALP00000072214	ENSGALP00000051183	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.907
ENSGALP00000072214	POLR2K	ENSGALP00000072214	ENSGALP00000048614	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase II subunit K.	0.911