STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF21229.1Glucose/arabinose dehydrogenase, beta-propeller fold. (1271 aa)    
Predicted Functional Partners:
SMF18020.1
Hypothetical protein.
  
     0.688
SMF11021.1
Hypothetical protein.
 
     0.659
SMF48730.1
Na+-driven multidrug efflux pump.
 
     0.635
SMF04951.1
F5/8 type C domain-containing protein.
 
     0.631
SMF11531.1
Hypothetical protein.
  
     0.625
SMF15806.1
Tetratricopeptide (TPR) repeat.
 
     0.617
SMF02568.1
Predicted extracellular nuclease.
 
     0.614
SMF51855.1
Hypothetical protein.
 
     0.602
SMF21881.1
Hypothetical protein.
  
     0.594
SME89359.1
Putative peptidoglycan binding domain-containing protein.
 
     0.585
Your Current Organism:
Cellulosimicrobium cellulans
NCBI taxonomy Id: 903523
Other names: C. cellulans J1, Cellulosimicrobium cellulans J1, Cellulosimicrobium cellulans str. J1, Cellulosimicrobium cellulans strain J1
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