Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
STY1793 | cedA | gene:17585727 | gene:17585726 | Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. | Cell division activator CedA; Activates the cell division inhibited by chromosomal DNA over-replication. | 0.590 |
STY2840 | cedA | gene:17586730 | gene:17585726 | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | Cell division activator CedA; Activates the cell division inhibited by chromosomal DNA over-replication. | 0.604 |
cedA | STY1793 | gene:17585726 | gene:17585727 | Cell division activator CedA; Activates the cell division inhibited by chromosomal DNA over-replication. | Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.590 |
cedA | STY2840 | gene:17585726 | gene:17586730 | Cell division activator CedA; Activates the cell division inhibited by chromosomal DNA over-replication. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family. | 0.604 |